The Influence of Microhydration on the Ionization Energy Thresholds of Uracil and Thymine
Document Type
Article
Publication Date
10-20-2005
Description
In the present study the ionization energy thresholds (IET's) of uracil and thymine have been calculated (with the B3LYP, PMP2, and P3 levels of theory using the standard 6-31++G(d,p) basis set) with one to three water molecules placed in the first hydration shell. Then (B3LYP) polarizable continuum model (PCM) calculations were performed with one to three waters of the hydration shell included. Calculations show there is a distinct effect of microhydration on uracil and thymine. For uracil, one added water results in a decrease in the IET of about 0.15 eV. The second and third water molecules cause a further decrease by about 0.07 eV each. For thymine, the first water molecule is seen to decrease the IET by about 0.1 eV, while the second and third water molecules cause a further decrease of less than 0.1 eV each. The changes in IET calculated here for thymine with one to three waters of hydration are smaller than the experimental values determined by Kim et al. (Kim, S. K.; Lee, W.; Herschbach, D. R. J. Phys. Chem. 1996, 100, 7933). Preliminary results presented here indicate that the experimental results may involve keto - enol tautomers of thymine. The results of placing the microhydrated structures of uracil and thymine in a PCM cavity was seen to make very little difference in the IET when compared to the IET of ordinary uracil or thymine in a PCM cavity. The implications are that accurate calculations of the IET's of uracil and thymine can be obtained by simply considering long-range solvation effects.
Citation Information
Close, David M.; Crespo-Hernández, Carlos E.; Gorb, Leonid; and Leszczynski, Jerzy. 2005. The Influence of Microhydration on the Ionization Energy Thresholds of Uracil and Thymine. Journal of Physical Chemistry A. Vol.109(41). 9279-9283. https://doi.org/10.1021/jp053235b PMID: 16833269 ISSN: 1089-5639